Cottage Cheese Protein Pasta Bake

Featured in: Warm Rustic Bake & Roast Plates

This hearty bake combines tender penne with a robust beef and tomato sauce, swirled with creamy cottage cheese and Parmesan. The dish emerges from the oven with a golden, bubbly mozzarella crust that creates the perfect cheesy topping in every bite.

What makes this special is how the cottage cheese melts into the sauce, creating pockets of creamy richness throughout without being overwhelming. The beef provides depth and protein, while Italian herbs bring classic flavors everyone loves.

Perfect for meal prep, this dish actually tastes better the next day as flavors meld together. The whole family will love this comforting twist on traditional pasta bakes.

Updated on Sun, 01 Feb 2026 16:01:00 GMT
Golden, bubbling mozzarella tops a baked dish of Cottage Cheese Protein Pasta Bake with Ground Beef, with fresh basil garnish. Save to Pinterest
Golden, bubbling mozzarella tops a baked dish of Cottage Cheese Protein Pasta Bake with Ground Beef, with fresh basil garnish. | basilhollow.com

My roommate used to joke that our kitchen smelled like an Italian grandmother lived there every Sunday, even though neither of us had Italian roots. The truth was simpler: I'd discovered that folding cottage cheese into pasta bake gave it this airy, almost soufflé-like texture that made even mediocre ground beef taste restaurant-worthy. One cold November evening, I threw together what I had in the fridge, cottage cheese, leftover pasta, a can of tomatoes, and somehow stumbled onto a dish that became our weekly ritual. The golden, bubbling top was just a bonus.

I made this for a potluck once, skeptical that anyone would want seconds of something with cottage cheese listed front and center. By the time I looked up from talking to a friend, the entire dish was gone and three people had texted me asking for the recipe. One of them, a self-proclaimed pasta purist, admitted she couldn't even tell there was cottage cheese in it until I mentioned it. That night I realized this bake had a quiet magic, it didn't announce itself, it just won people over bite by bite.

Ingredients

  • Penne or rigatoni (12 ounces): Their ridges and tubes catch the sauce and cheese beautifully, and undercooking them slightly prevents mushy pasta after baking.
  • Lean ground beef (1 pound): Using 85% lean keeps the dish rich without an oily layer pooling on top, and browning it well adds deep, caramelized flavor.
  • Low-fat cottage cheese (1 cup): This is the secret MVP, it melts into creamy pockets, bumps up the protein, and adds moisture without extra fat.
  • Parmesan cheese (½ cup, grated): Its sharp, nutty punch balances the mild cottage cheese and adds a savory backbone to every forkful.
  • Part-skim mozzarella (1 cup, divided): Half gets folded in for gooey pockets, the rest creates that golden, bubbly top we all fight over.
  • Yellow onion (1 medium, finely chopped): Sweating it down until translucent builds a sweet, aromatic base that makes the sauce taste slow-simmered.
  • Garlic (2 cloves, minced): Just 30 seconds in the pan releases its fragrance without turning bitter, a small step that makes a big difference.
  • Crushed tomatoes (14 ounces): They give body and bright acidity, the kind of tomato flavor that tastes homemade even from a can.
  • Tomato paste (6 ounces): Stirring it into the beef first caramelizes it slightly, deepening the color and adding concentrated umami.
  • Beef broth or water (½ cup): This loosens the sauce just enough so it coats the pasta instead of clumping.
  • Olive oil (1 tablespoon): A little goes a long way to keep the onions from sticking and adds a fruity richness.
  • Dried oregano and basil (1 teaspoon each): Classic Italian herbs that smell like comfort and taste like Sunday dinner.
  • Red pepper flakes (½ teaspoon, optional): A gentle warmth that sneaks up on you, feel free to skip if cooking for kids.
  • Salt and black pepper: Season in layers, a pinch when browning the beef, another when building the sauce, so every component sings.
  • Fresh parsley or basil: A handful of green at the end makes the dish look alive and adds a pop of freshness against all that richness.

Instructions

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Ideal for slow-simmered sauces, braised vegetables, baked dips, and cozy one-pot meals with even heat.
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Get the oven ready:
Preheat to 375°F (190°C) and lightly grease a 9×13-inch baking dish so nothing sticks to the edges. This step sets you up for an even bake and easy cleanup later.
Boil the pasta:
Cook it in salted water until just al dente, about 1 to 2 minutes shy of package directions, because it will keep cooking in the oven. Drain and set aside, no need to rinse.
Start the sauce base:
Heat olive oil in a large skillet over medium heat, then add the chopped onion and sauté until it turns translucent and soft, about 3 to 4 minutes. Toss in the minced garlic and cook just 30 seconds until your kitchen smells amazing.
Brown the beef:
Add the ground beef, breaking it into small crumbles with a wooden spoon, and cook until no pink remains, about 6 to 8 minutes. If there is a lot of excess fat, drain it off so the sauce stays clean and not greasy.
Build the tomato sauce:
Stir in the tomato paste first to coat the beef and let it cook for a minute, then add crushed tomatoes, beef broth, oregano, basil, red pepper flakes if using, salt, and pepper. Let it simmer on low for 8 to 10 minutes, stirring now and then, until the flavors meld and the sauce thickens slightly.
Combine everything:
In a large bowl, mix the drained pasta, beef-tomato sauce, cottage cheese, Parmesan, and half the mozzarella until everything is evenly coated and creamy. The cottage cheese will look a bit lumpy now, but it melts into magic in the oven.
Assemble the bake:
Spread the pasta mixture into your prepared baking dish, smoothing the top gently. Sprinkle the remaining mozzarella over the surface so it gets golden and bubbly.
Bake until bubbly:
Slide the dish into the oven and bake for 20 to 25 minutes, until the cheese is melted, bubbling at the edges, and starting to turn golden brown in spots. The smell alone will have everyone hovering near the kitchen.
Rest and garnish:
Let the bake sit for 5 minutes out of the oven so the cheese sets just enough to slice cleanly. Scatter fresh parsley or basil over the top before serving for color and a hint of brightness.
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Ideal for slow-simmered sauces, braised vegetables, baked dips, and cozy one-pot meals with even heat.
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A hearty serving of Cottage Cheese Protein Pasta Bake with Ground Beef sits beside a green salad on a rustic table. Save to Pinterest
A hearty serving of Cottage Cheese Protein Pasta Bake with Ground Beef sits beside a green salad on a rustic table. | basilhollow.com

The first time I served this to my dad, a man who claims he doesn't like cottage cheese, he went back for seconds without a word. Halfway through his third helping, he looked up and asked what made it so creamy. When I told him, he paused, shrugged, and said, well, I guess I like cottage cheese now. That moment, watching him scrape his plate clean, felt like a small victory for all the supposedly healthy ingredients that usually get side-eyed at the dinner table.

Swaps and Substitutions

Ground turkey or chicken work beautifully if you want something lighter, just add a pinch of extra salt since they are milder than beef. I have also stirred in two cups of fresh spinach or diced bell peppers right before baking, which adds color and sneaks in more veggies without changing the texture. For gluten-free friends, swap in your favorite gluten-free pasta, just watch the cook time since some brands turn soft faster than wheat versions. If you are vegetarian, skip the beef entirely and load up on mushrooms, zucchini, and a splash of soy sauce for umami depth.

Make-Ahead Magic

This bake is a dream for busy weeknights because you can assemble the whole thing up to a day ahead. Just cover it tightly with foil and stash it in the fridge, then pull it out 20 minutes before baking so it comes closer to room temperature. I have done this on Sunday evenings more times than I can count, and on a hectic Wednesday, sliding a ready-to-bake dish into the oven feels like a gift from past me. Leftovers keep for three days in an airtight container and reheat covered in the oven or microwave without drying out.

Serving Suggestions

A simple green salad with a sharp vinaigrette cuts through the richness perfectly, and I love serving garlic bread on the side for anyone who wants to soak up every last bit of sauce. If you are feeding a crowd, this pairs well with roasted broccoli or a platter of grilled vegetables. The bake is hearty enough to stand alone, but those little sides make the meal feel complete and a bit more special.

  • Toss a handful of cherry tomatoes into the salad for a burst of sweetness that echoes the tomato sauce.
  • Drizzle a little balsamic glaze over the top just before serving for a fancy finish.
  • Serve with a glass of red wine or sparkling water with lemon to balance the richness.
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Effortlessly chop vegetables, slice meats, and prep ingredients smoothly for everyday cooking and recipe preparation.
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Close-up of Cottage Cheese Protein Pasta Bake with Ground Beef revealing creamy cottage cheese and chunky tomato beef sauce. Save to Pinterest
Close-up of Cottage Cheese Protein Pasta Bake with Ground Beef revealing creamy cottage cheese and chunky tomato beef sauce. | basilhollow.com

This pasta bake has become one of those recipes I turn to when I need something reliable, nourishing, and just a little bit special without any fuss. It is proof that comfort food does not have to choose between indulgent and wholesome, sometimes it can be both at once.

Recipe FAQs

Can I use different pasta shapes?

Yes, rigatoni, ziti, or even macaroni work beautifully. The key is choosing pasta that holds sauce well in its ridges or tubes.

Is cottage cheese visible in the finished dish?

The cottage cheese melts into the sauce, creating creamy pockets rather than remaining distinct. Most people won't identify it as cottage cheese by sight.

Can I make this ahead of time?

Absolutely. Assemble the dish, refrigerate covered overnight, then bake when ready. You may need to add 5-10 minutes to the baking time if chilled.

What's the best way to reheat leftovers?

Reheat individual portions in the microwave with a splash of water, covered. For larger amounts, cover with foil and warm at 350°F until heated through.

Can I freeze this pasta bake?

Yes, freeze before baking for best results. Thaw overnight in the refrigerator, then bake as directed. Already-baked portions can be frozen for up to 3 months.

Cottage Cheese Protein Pasta Bake

Al dente pasta layered with savory beef, cottage cheese, and bubbling mozzarella creates this satisfying high-protein bake.

Prep Time
20 minutes
Time to Cook
45 minutes
Overall Time
65 minutes
Recipe by Charlotte Adams


Skill Level Medium

Cuisine Type American-Italian

Makes 6 Number of Servings

Diet Considerations None specified

What You'll Need

Pasta

01 12 ounces penne or rigatoni pasta

Meat & Dairy

01 1 pound lean ground beef (85% lean or higher)
02 1 cup low-fat cottage cheese
03 ½ cup grated Parmesan cheese
04 1 cup shredded part-skim mozzarella cheese, divided

Vegetables & Aromatics

01 1 medium yellow onion, finely chopped
02 2 cloves garlic, minced

Sauce

01 1 can (14 ounces) crushed tomatoes
02 1 can (6 ounces) tomato paste
03 ½ cup beef broth or water

Pantry & Spices

01 1 tablespoon olive oil
02 1 teaspoon dried oregano
03 1 teaspoon dried basil
04 ½ teaspoon red pepper flakes (optional)
05 Salt and freshly ground black pepper to taste

Garnish

01 Fresh parsley or basil leaves for garnish

Directions

Step 01

Prepare Baking Dish: Preheat oven to 375°F. Lightly grease a 9×13-inch baking dish with cooking spray or oil.

Step 02

Cook Pasta: Bring a large pot of salted water to a boil. Cook pasta until just al dente, approximately 1–2 minutes less than package directions. Drain and set aside.

Step 03

Sauté Aromatics: Heat olive oil in a large skillet over medium heat. Add onion and sauté until translucent, 3–4 minutes. Stir in garlic and cook for 30 seconds until fragrant.

Step 04

Brown Ground Beef: Add ground beef, breaking it into small pieces. Cook until browned and no longer pink, 6–8 minutes. Drain excess fat if desired.

Step 05

Build Sauce: Stir in tomato paste to coat the beef. Add crushed tomatoes and beef broth. Mix in oregano, basil, red pepper flakes (if using), salt, and pepper. Simmer on low for 8–10 minutes, stirring occasionally.

Step 06

Combine Mixture: In a large bowl, combine drained pasta, beef-tomato sauce, cottage cheese, Parmesan, and half of the mozzarella. Toss gently until evenly mixed.

Step 07

Assemble Bake: Spread the mixture into the prepared baking dish. Sprinkle the remaining mozzarella over the top.

Step 08

Bake: Bake for 20–25 minutes, or until the cheese is melted, bubbly, and golden at the edges.

Step 09

Rest and Serve: Remove from oven and let rest for 5 minutes. Garnish with chopped parsley or basil before serving.

Equipment Needed

  • Large pot
  • Large skillet
  • Mixing bowl
  • 9×13-inch baking dish
  • Wooden spoon or spatula
  • Colander

Allergy Notice

Review the ingredient list for possible allergy risks. If needed, check with a medical expert.
  • Contains wheat from pasta
  • Contains milk from cottage cheese, Parmesan, and mozzarella
  • May contain soy; check cheese and pasta labels
  • Always verify ingredient labels for hidden allergens

Nutrition Details (per serving)

This data is for reference—always check with your doctor for health matters.
  • Calorie Count: 575
  • Total Fat: 20 g
  • Carbohydrates: 56 g
  • Proteins: 41 g